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Contents
Home
Getting started
How-to guides
Reference guide
Input Parameters/Flags
Samplesheet schema
Containers
Outputs & results
Troubleshooting
Glossary
About the project
Changelog
License
Useful links
PGS Catalog
pgsc_calc Github
Issue tracker
pgscatalog_utils Github
Index
.rst
.pdf
Contents
Calculating polygenic scores
Making genomic data and scorefiles compatible
Working in different environments
Working with complex datasets
How-to guides
Contents
Calculating polygenic scores
Making genomic data and scorefiles compatible
Working in different environments
Working with complex datasets
How-to guides
#
Calculating polygenic scores
#
How do I prepare my input genomes?
How to set up a samplesheet
How to use scoring files in the PGS Catalog
How to apply multiple scores in parallel
Making genomic data and scorefiles compatible
#
How to use a custom scoring file
How to liftover scoring files to match your input genome build
How to set effect type of variants in a scoring file
Working in different environments
#
How do I run
pgsc_calc
on larger datasets and more powerful computers?
How do I run the pipeline on an M1 Mac?
Working with complex datasets
#
How to get a copy of the standardised genomic data
How to set parameters in a file