How do I change the version or update pgsc_calc?

If you would like to use a specific version of pgsc_calc and are running the pipeline using our Github repository you can use some of the default nextflow parameters (see -r command docs). To run a specific version:

nextflow run pgscatalog/pgsc_calc -profile <docker/singularity/conda> -r [version name, e.g. v2.0.0-alpha.5] ....

To run the latest version of a previously cloned repository you can use nextflow pull or add the -latest flag to a run command (see `nextflow docs <https://www.nextflow.io/docs/latest/cli.html#commands`_):

nextflow run pgscatalog/pgsc_calc -profile <docker/singularity/conda> -latest ....